Specialized Superresolution Methods Literature References
In additional to the single-molecule and point-spread function engineering approaches to superresolution microscopy, a host of emerging methodology is now being examined for potential applications in this arena. The review articles and research reports listed in this section describe a variety of new techniques related to superresolution imaging.
Recommended Reading
- Betzig, E. Sparse and composite coherent lattices. Physical Review A 71: 063406-5 (2005).
- de Jonge, N., Peckys, D. B., Kremers, G. J. and Piston, D. W. Electron microscopy of whole cells in liquid with nanometer resolution. Proceedings of the National Academy of Sciences (USA) 106: 2159-2164 (2009).
- Digman, M. A., Wiseman, P. W., Horwitz, A. R. and Gratton, E. Detecting protein complexes in living cells from laser scanning confocal image sequences by the cross correlation raster image spectroscopy method. Biophysical Journal 96: 707-716 (2009).
- Dogan, M., Yalcin, A., Jain, S., Goldberg, M. B., Swan, A. K., Unlu, M. S. and Goldberg, B. B. Spectral self-interference fluorescence microscopy for subcellular imaging. IEEE Journal of Selected Topics in Quantum Electronics 14: 217-225 (2008).
- Downing, K. H., Sui, H. and Auer, M. Electron tomography: A 3D view of the subcellular world. Analytical Chemistry 79: 7949-7957 (2007).
- Franz, C. M. and Puech, P. H. Atomic force microscopy: A versatile tool for studying cell morphology, adhesion and mechanics. Cellular and Molecular Bioengineering 1: 289-300 (2008).
- Generosi, J., Margaritondo, G., Kropf, M., Hirling, H., Catsicas, S., Johnsson, K., Tolk, N. H., Piston, D. W. and Cricenti, A. Photobleaching-free infrared near-field microscopy localizes molecules in neurons. Journal of Applied Physics 104: 106102-3 (2008).
- Genet, C. and Ebbesen, T. W. Light in tiny holes. Nature 445: 39-46 (2007).
- Giepmans, B. N. G. Bridging fluorescence microscopy and electron microscopy. Histochemistry and Cell Biology 130: 211-217 (2008).
- Haeberle, O. and Simon, B. Saturated structured confocal microscopy with theoretically unlimited resolution. Optics Communications 282: 3657-3664 (2009).
- Heymann, J. A. W., Shi, D., Kim, S., Bliss, D., Milne, J. L. S., Subramaniam, S. 3D imaging of mammalian cells with ion-abrasion scanning electron microscopy. Journal of Structural Biology 166: 1-7 (2009).
- Hu, D. Tian, Z., Wu, W., Wan, W. and Li, A. D. Q. Photoswitchable nanoparticles enable high-resolution cell imaging: PULSAR microscopy. Journal of the American Chemical Society 130: 15279-15281 (2008).
- Ji, N., Milkie, D. E. and Betzig, E. Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues. Nature Methods 7: 141-147 (2009).
- Kam, Z., Kner, P., Agard, D. and Sedat, J. W. Modelling the application of adaptive optics to wide-field microscope live imaging. Journal of Microscopy 226: 33-42 (2007).
- Le Gros, M. A., McDermott, G., Uchida, M., Knoechel, C. G. and Larabell, C. A. High-aperture cryogenic light microscopy. Journal of Microscopy 235: 1-8 (2009).
- Lindek, S. and Stelzer, E. H. K. Resolution improvement by nonconfocal theta microscopy. Optics Letters 24: 1505-1507 (1999).
- Lu, J., Min, W., Conchello, J. A., Xie, X. S. and Lichtman, J. W. Super-resolution laser scanning microscopy through spatiotemporal modulation. Nano Letters 9: 3883-3889 (2009).
- Lucic, V., Leis, A. and Baumeister, W. Cryo-electron tomography of cells: Connecting structure and function. Histochemistry and Cell Biology 130: 185-196 (2008).
- Mao, S., Benninger, R. K. P., Yan, Y., Petchprayoon, C., Jackson, D., Easley, C. J., Piston, D. W. and Marriott, G. Optical lock-in detection of FRET using synthetic and genetically encoded optical switches. Biophysical Journal 94: 4515-4524 (2008).
- Meislitzer-Ruppitsch, C., Rohrl, C., Neumuller, J., Pavelka, M. and Ellinger, A. Photooxidation technology for correlated light and electron microscopy. Journal of Microscopy 235: 322-335 (2009).
- Oreopoulos, J. and Yip, C. M Combined scanning probe and total internal reflection fluorescence microscopy. Methods 46: 2-10 (2008).
- Petrasek, Z. and Schwille, P. Fluctuations as a source of information in fluorescence microscopy. Journal of the Royal Society Interface 6: S15-S25 (2009).
- Planken, P. Microscopy: A terahertz nanoscope. Nature 456: 454-455 (2008).
- Pohl, D. W., Denk, W. and Lanz, M. Optical stethoscopy: Image recording with resolution wavelength/20. Applied Physics Letters 44: 651-653 (1984).
- Schwartz, C. L., Sarbash, V. I., Ataullakhanov, F. I., McIntosh, J. R. and Nicastro, D. Cryo-fluorescence microscopy facilitates correlations between light and cryo-electron microscopy and reduces the rate of photobleaching. Journal of Microscopy 227: 98-109 (2007).
- Sheetz, K. E. and Squier, J. Ultrafast optics: Imaging and manipulating biological systems. Journal of Applied Physics 105: 051101-17 (2009).
- Smolyaninov, I. I., Hung, Y. J. and Davis, C. C. Magnifying superlens in the visible frequency range. Science 315: 1699-1701 (2007).
- Smolyaninov, I. I. Optical microscopy beyond the diffraction limit. HFSP Journal 2: 129-131 (2008).
- Steven, A. C. and Baumeister, W. The future is hybrid. Journal of Structural Biology 163: 186-195 (2008).
- Zipfel, W. R., Williams, R. M. and Webb, W. W. Nonlinear magic: Multiphoton microscopy in the biosciences. Nature Biotechnology 21: 1369-1377 (2003).
Additional Literature Sources
- Betzig, E. Excitation strategies for optical lattice microscopy. Optics Express 13: 3021-3036 (2005).
- Betzig, E. and Chichester, R. J. Single molecules observed by near-field scanning optical microscopy. Science 262: 1422-1425 (1993).
- Degen, C. Nanoscale magnetometry: Microscopy with single spins. Nature Nanotechnology 3: 643-644 (2008).
- Digman, M. A. and Gratton, E. Analysis of diffusion and binding in cells using the RICS approach. Microscopy Research and Technique 72: 323-332 (2009).
- Egner, A. and Hell, S. W. Equivalence of the Huygens-Fresnel and Debye approach for the calculation of high aperture point-spread functions in the presence of refractive index mismatch. Journal of Microscopy 193: 244-249 (1999).
- Egner, A. and Hell, S. W. Time multiplexing and parallelization in multifocal multiphoton microscopy. Journal of the Optical Society of America A 17: 1192-1201 (2000).
- Elgass, K., Caesar, K., Schleifenbaum, F., Stierhof, Y. D., Meixner, A. J. and Harter, K. Novel application of fluorescence lifetime and fluorescence microscopy enables quantitative access to subcellular dynamics in plant cells. PLoS ONE 4: e5716-13 (2009).
- Engel, E., Huse, N., Klar, T. A. and Hell, S. W. Creating wavelength/3 focal holes with a Mach-Zehnder interferometer. Applied Physics B: Lasers and Optics 77: 11-17 (2003).
- Festy, F., Ameer-Beg, S. M., Ng, T. and Suhling, K. Imaging proteins in vivo using fluorescence lifetime microscopy. Molecular BioSystems 3: 381-391 (2007).
- Frank, J. H., Elder, A. D., Swartling, J., Venkitaraman, A. R., Jeyasekharan, A. D. and Kaminski, C. F. A white light confocal microscope for spectrally resolved multidimensional imaging. Journal of Microscopy 227: 203-215 (2007).
- Giansante, C., Olive, A. G. L., Schafer, C., Raffy, G. and Del Guerzo, A. Time-resolved confocal fluorescence microscopy of trinitrobenzene-responsive organic nanofibers. Analytical and Bioanalytical Chemistry 396: 125-131 (2009).
- Kastrup, L., Blom, H., Eggeling, C. and Hell, S. W. Fluorescence fluctuation spectroscopy in subdiffraction focal volumes. Physical Review Letters 94: 178104-4 (2005).
- Kee, H. L., Diers, J. R., Ptaszek, M., Muthiah, C., Fan, D., Lindsey, J. S., Bocian, D. F. and Holten, D. Chlorin-bacteriochlorin energy-transfer dyads as prototypes for near-infrared molecular imaging probes: Controlling charge-transfer and fluorescence properties in polar media. Photochemistry and Photobiology 85: 909-920 (2009).
- Kunik, D., Luduena, S. J., Costantino, S. and Martinez, O. E. Fluorescent two-photon nanolithography. Journal of Microscopy 229: 540-544 (2008).
- Langhojer, F., Dimler, F., Jung, G. and Brixner, T. Ultrafast photoconversion of the green fluorescent protein studied by accumulative femtosecond spectroscopy. Biophysical Journal 96: 2763-2770 (2009).
- Liu, Z., Durant, S., Lee, H., Pikus, Y., Xiong, Y., Sun, C. and Zhang, X. Experimental studies of far-field superlens for sub-diffractional optical imaging. Optics Express 15: 6947-6954 (2007).
- Liu, Z., Lee, H., Xiong, Y., Sun, C. and Zhang, X. Far-field optical hyperlens magnifying sub-diffraction-limited objects. Science 315: 1686 (2007).
- Lowry, M., Fakayode, S. O., Geng, M. L., Baker, G. A., Wang, L., McCarroll, M. E., Patonay, G. and Warner, I. M. Molecular fluorescence, phosphorescence, and chemiluminescence spectrometry. Analytical Chemistry 80: 4551-4574 (2008).
- Mishchenko, Y. On optical detection of densely labeled synapses in neuropil and mapping connectivity with combinatorially multiplexed fluorescent synaptic markers. PLoS ONE 5: e8853-10 (2010).
- Mondal, P. P. and Diaspro, A. Lateral resolution improvement in two-photon excitation microscopy by aperture engineering. Optics Communications 281: 1855-1859 (2008).
- Nakayama, Y., Pauzauskie, P. J., Radenovic, A., Onorato, R. M., Saykally, R. J., Liphardt, J. and Yang, P. Tunable nanowire nonlinear optical probe. Nature Letters 447: 1098-1101 (2007).
- Nikolaenko, A., Krishnamachari, V. V. and Potma, E. O. Interferometric switching of coherent anti-Stokes Raman scattering signals in microscopy. Physical Review 79: 013823-7 (2009).
- Odenheimer, J., Heermann, D. W. and Kreth, G. Brownian dynamics simulations reveal regulatory properties of higher-order chromatin structures. European Biophysics Journal 38: 749-756 (2009).
- Palomba, S. and Novotny, L. Near-field imaging with a localized nonlinear light source. Nano Letters 9: 3801-3804 (2009).
- Parkinson, D. Y., McDermott, G., Etkin, L. D., Le Gross, M. A. and Larabell, C. A. Quantitative 3-D imaging of eukaryotic cells using soft X-ray tomography. Journal of Structural Biology 162: 380-386 (2008).
- Prinz, A., Reither, G., Diskar, M. and Schultz, C. Fluorescence and bioluminescence procedures for functional proteomics. Proteomics 8: 1179-1196 (2008).
- Ram, S., Prabhat, P., Chao, J., Ward, E. S. and Ober, R. J. Improved single particle localization accuracy with dual objective multifocal plane microscopy. Optics Express 17: 6881-6898 (2009).
- Rauch, J., Knoch, T. A., Solovei, I., Teller, K., Stein, S., Buiting, K., Horsthemke, B., Langowski, J., Cremer, T., Hausmann, M. and Cremer, C. Light optical precision measurements of the active and inactive Prader-Willi syndrome imprinted regions in human cell nuclei. Differentiation 76: 66-82 (2008).
- Richards, C. I., Hsiang, J. and Dickson, R. M. Synchronously amplified fluorescence image recovery (SAFIRe). Journal of Physical Chemistry B 114: 660-665 (2010).
- Rochira, J. A., Gudheti, M. V., Gould, T. J., Laughlin, R. R., Nadeau, J. L. and Hess, S. T. Fluorescence intermittency limits brightness in CdSe/ZnS nanoparticles quantified by fluorescence correlation spectroscopy. Journal of Physical Chemistry C 111: 1695-1708 (2007).
- Rong, G., Wang, H., Skewis, L. R. and Reinhard, B. M. Resolving Sub-diffraction limit encounters in nanoparticle tracking using live cell Plasmon coupling microscopy. Nano Letters 8: 3386-3393 (2008).
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