Recommended Literature

• Agard, D. A. and Sedat, J.W. Three-dimensional architecture of a polytene nucleus. Nature302: 676-681 (1983).
• de Monvel, J. B., Scarfone, E., le Calvez, S. and Ulfendahl, M. Image-adaptive deconvolution for three-dimensional deep biological imaging. Biophysical Journal 85: 3991-4001 (2003).
• Dernburg, A. F., Broman, K. W., Fung, J. C., Marshall, W. F., Philips, J., Agard, D. A. and Sedat, J. W. Perturbation of nuclear architecture by long-distance chromosome interactions. Cell85: 745-759 (1996).
• Egner, A. and Hell, S. W. Equivalence of the Huygens-Fresnel and Debye approach for the calculation of high aperture point-spread functions in the presence of refractive index mismatch. Journal of Microscopy 193: 244-249 (1999).
• Femino, A. M., Fay, F. S., Fogarty, K. and Singer, R. H. Visualization of single RNA transcripts in situ. Science 280: 585-590 (1998).
• Hanser, B. M., Gustafsson, M. G. L., Agard, D. A. and Sedat, J. W. Phase retrieval for high-numerical-aperture optical systems. Optics Letters 28: 801- 803 (2003).
• He, X., Asthana, S. and Sorger, P. K. Transient sister chromatid separation and elastic deformation of chromosomes during mitosis in budding yeast. Cell 101: 763-775 (2000).
• Hiraoka, Y., Sedat, J.W. and Agard, D. A. The use of a charge-coupled device for quantitative optical microscopy of biological structures. Science 238: 36-41 (1987).
• Hiraoka, Y., Sedat, J. W. and Agard, D. A. Determination of three-dimensional imaging properties of a light microscope system. Biophysical Journal 57: 325-333 (1990).
• Holmes, T. J. and O'Connor, N. J. Blind deconvolution of 3D transmitted light brightfield micrographs. Journal of Microscopy 200: 114-127 (2000).
• Kam, Z., Agard, D. A. and Sedat, J. W. Three-dimensional microscopy in thick biological samples: a fresh approach for adjusting focus and correcting spherical aberration.Bioimaging 5: 40-49 (1997).
• Kam, Z., Hanser, B., Gustafsson, M. G. L., Agard, D. A. and Sedat, J. W. Computational adaptive optics for live three-dimensional biological imaging. Proceedings of the National Academy of Sciences (USA) 98: 3790-3795 (2001).
• Kozubek, M., Matula, P., Matula, P. and Kozubek, S. Automated acquisition and processing of multidimensional image data in confocal in vivo microscopy. Microscopy Research and Technique 64: 164-175 (2004).
• Marian, A., Charriere, F., Colomb, T., Montfort, F., Kuhn, J., Marquet, P. and Depeursinge, C. On the complex three-dimensional amplitude point spread function of lenses and microscope objectives: theoretical aspects, simulations and measurements by digital holography.Journal of Microscopy 225: 156-169 (2007).
• Qian, H., Sheetz, M. P. and Elson, E. L. Single particle tracking. Analysis of diffusion and flow in two-dimensional systems. Biophysical Journal 60: 910-921 (1991).
• Rizzuto, R., Carrington, W. and Tuft, R. A. Digital imaging microscopy of living cells. Trends in Cell Biology 8: 288-292 (1998).
• Ronneberger, O., Baddeley, D., Scheipl, F., Verveer, P. J., Burkhardt, H., Cremer, C., Fahrmeir, L, Cremer, T. and Joffe, B. Spatial quantitative analysis of fluorescently labeled nuclear structures: problems, methods, pitfalls. Chromosome Research 16: 523-562 (2008).
• Sarder, P. and Nehorai, A. Deconvolution methods for 3-D fluorescence microscopy images. IEEE Signal Processing Magazine 23: 32-45 (2006).
• Scalettar, B. A., Swedlow, J. R., Sedat, J. W. and Agard, D. A. Dispersion, aberration and deconvolution in multi-wavelength fluorescence images. Journal of Microscopy 182: 50-60 (1996).
• Schaefer, B. C., Ware, M. F., Marrack, P., Fanger, G. R., Kappler, J. W., Johnson, G. L. and Monks, C. R. F. Live cell fluorescence imaging of T cell MEKK2: redistribution and activation in response to antigen stimulation of the T cell receptor. Immunity 11: 411-421 (1999).
• Schaefer, L. H., Schuster, D. and Herz, H. Generalized approach for accelerated maximum likelihood based image restoration applied to three-dimensional fluorescence microscopy.Journal of Microscopy 204: 99-107 (2001).
• Schlecht, J., Barnard, K. and Pryor, B. Statistical inference of biological structure and point spread functions in 3D microscopy. Third International Symposium on 3D Data Processing, Visualization and Transmission 1: 373-380 (2006).
• Sedarat, F., Lin, E., Moore, E. D. W. and Tibbits, G. F. Deconvolution of confocal images of dihydropyridine and ryanodine receptors in developing cardiomyocytes. Journal of Applied Physiology 97: 1098-1103 (2004).
• Swedlow, J.R., Sedat, J. W. and Agard, D. A. Multiple chromosomal populations of topoisomerase II detected in vivo by time-lapse, three-dimensional wide-field microscopy.Cell 73: 97-108 (1993).
• Von Tiedemann, M., Fridberger, A., Ulfendahl, M. and De Monvel, J. B. Image Adaptive point-spread function estimation and deconvolution for in vivo confocal microscopy.Microscopy Research and Technique 69: 10-20 (2006).
• Vermolen, B. J., Garini, Y. and Young, I. T. 3D restoration with multiple images acquired by a modified conventional microscope. Microscopy Research and Technique 64: 113-125 (2004).
• Verveer, P. J., Gemkow, M. J. and Jovin, T. M. A comparison of image restoration approaches applied to three-dimensional confocal and wide-field fluorescence microscopy. Journal of Microscopy 193: 50-61 (1999).
• Yoo, H., Song, I. and Gweon, D. G. Measurement and restoration of the point spread function of fluorescence confocal microscopy. Journal of Microscopy 221: 172-176 (2006).