Fluorescent Protein Literature References

Fluorescent protein development strategies are focused on fine-tuning the photophysical properties of blue to yellow variants derived from the Aequorea victoria jellyfish, as well as on the development of monomeric versions derived from other organisms that emit in the yellow-orange to far-red regions of the visible light spectrum. The latest efforts in jellyfish variants have resulted in new and improved monomeric probes for the blue, cyan, green, and yellow regions, while the relentless search for a bright monomeric and fast-maturing red fluorescent protein has yielded a host of excellent candidates spanning the longer wavelengths, though none are yet optimal for all applications. Photoactivatable fluorescent proteins are emerging as a powerful class of probes for intracellular dynamics and, unexpectedly, as a useful tool for the development of superresolution microscopy techniques.

Recommended Literature

Tsien, R. Y. The Green fluorescent protein. Annual Review of Biochemistry 67: 509-544 (1998).
Shaner, N. C., Steinbach, P. A. and Tsien, R. Y. A guide to choosing fluorescent proteins.Nature Methods 2: 905-915 (2005).
Shaner, N. C., Patterson, G. H. and Davidson, M. W. Advances in fluorescent protein technology. Journal of Cell Science 120: 4247-4260 (2007).
Remington, S. J. Fluorescent proteins: maturation, photochemistry and photophysics.Current Opinion in Structural Biology 16: 714-721 (2006).
Chudakov, D. M., Lukyanov, S. and Lukyanov, K. A. Fluorescent proteins as a toolkit for in vivo imaging. Trends in Biotechnology 23: 605-613 (2005).
Verkhusha, V. V. and Lukyanov, K. A. The molecular properties and applications of Anthozoa fluorescent proteins and chromoproteins. Nature Biotechnology 22: 289-296 (2004).
Giepmans, B. N. G., Adams, S. R., Ellisman, M. H. and Tsien, R., The fluorescent toolbox for assessing protein location and function. Science 312: 217-224 (2006).
Lukyanov, K. A., Fradkov, A. F., Gurskaya, N. G., Matz, M. V., Labas, Y. A., Savitsky, A. P., Markelov, M. L., Zaraisky, A. G., Zhao, X., Fang, Y., Tan, W. and Lukyanov, S. A. natural animal coloration can be determined by a nonfluorescent green fluorescent protein homolog.Journal of Biological Chemistry 275: 25879-25882 (2000).
Shagin, D. A., Barsova, E. V., Yanushevich, Y. G., Fradkov, A. F., Lukyanov, K. A., Labas, Y. A., Semenova, T. N., Ugalde, J. A., Meyers, A., Nunez, J. M., Widder, E. A., Lukyanov, S. A. and Matz, M. V. GFP-like proteins as ubiquitous metazoan superfamily: evolution of functional features and structural complexity. Molecular Biology and Evolution 21: 841-850 (2004).
Lippincott-Schwartz, J. and Patterson, G. H. Development and use of fluorescent protein markers in living cells. Science 300: 87-91 (2003).
Miyawaki, A., Nagai, T. and Mizuno, H. Engineering fluorescent proteins. Advances in Biochemical Engineering/Biotechnology 95: 1-15 (2005).
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Fernandez-Suarez, M. and Ting, A. Y. Fluorescent probes for super-resolution imaging in living cells. Nature Reviews Molecular Cell Biology 9: 929-943 (2008).
Chalfie, M., Tu, Y., Euskirchen, G., Ward, W. W. and Prasher, D. C. Green fluorescent protein as a marker for gene expression. Science 263: 802-805 (1994).
Heim, R., Cubitt, A. B. and Tsien, R. Y. Improved green fluorescence. Nature 373: 663-664 (1995).
Ormo, M., Cubitt, A. B., Kallio, K., Gross, L. A., Tsien, R. Y. and Remington, S. J. Crystal structure of the Aequorea victoria green fluorescent protein. Science 273: 1392-1396 (1996).
Griesbeck, O., Baird, G. S., Campbell, R. E., Zacharias, D. A. and Tsien, R. Y. Reducing the environmental sensitivity of yellow fluorescent protein. Journal of Biological Chemistry276: 29188-29194 (2001).
Zacharias, D. A., Violin, J. D., Newton, A. C. and Tsien, R. Y. Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells. Science 296: 913-916 (2002).
Matz, M. V., Fradkov, A. F., Labas, Y. A., Savitsky, A. P., Zaraisky, A. G., Markelov, M. L. and Lukyanov, S. A. Fluorescent proteins from nonbioluminescent Anthozoa species. Nature Biotechnology 17: 969-973 (1999).
Campbell, R. E., Tour, O., Palmer, A. E., Steinbach, P. A., Baird, G. S., Zacharias, D. A. and Tsien, R. Y. A monomeric red fluorescent protein. Proceedings of the National Academy of Sciences (USA) 99: 7877-7882 (2002).
Shaner, N. C., Campbell, R. E., Steinbach, P. A., Giepmans, B. N. G., Palmer, A. E. and Tsien, R. Y. Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nature Biotechnology 22: 1567-1576 (2004).
Shaner, N. C., Lin, M. Z., McKeown, M. R., Steinbach, P. A., Hazelwood, K. L., Davidson, M. W. and Tsien, R. Y. Improving the photostability of bright monomeric orange and red fluorescent proteins. Nature Methods 5: 545-562 (2008).
Wang, L., Jackson, W. C., Steinbach, P. A. and Tsien, R. Y. Evolution of new nonantibody proteins via iterative somatic hypermutation. Proceedings of the National Academy of Sciences (USA) 101: 16745-16749 (2004).
Merzlyak, E. M., Goedhart, J., Shcherbo, D., Bulina, M. E., Shceglov, A. S., Fradkov, A. F., Gaintzeva, A., Lukyanov, K. A., Lukyanov, S., Gadella, T. W. J. and Chudakov, D. M. Bright monomeric red fluorescent protein with an extended fluorescence lifetime. Nature Methods 4: 555- 567(2007).
Shcherbo, D., Merzlyak, E. M., Chepurnykh, T. V., Fradkov, A. F., Ermakova, G. V., Solovieva, E. A., Lukyanov, K. A., Bogdanova, E. A., Zaraisky, A. G., Lukyanov, S. and Chudakov, D. M. Bright far-red fluorescent protein for whole-body imaging. Nature Methods 4: 741-754 (2007).
Nagai, T., Ibata, K., Park, E. S., Kubota, M., Mikoshiba, K. and Miyawaki, A. A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications.Nature Biotechnology 20: 87-90 (2002).
Rizzo, M. A., Springer, G. H., Granada, B. and Piston, D. W. An improved cyan fluorescent protein variant useful for FRET. Nature Biotechnology 22: 445-449 (2004).
Karasawa, S., Araki, T., Nagai, T., Mizuno, H. and Miyawaki, A. Cyan-emitting and orange-emitting fluorescent proteins as a donor/acceptor pair for fluorescence energy transfer.Biochemical Journal 381: 307-312 (2004).
Pedelacq, J. D., Cabantous, S., Tran, T., Terwilliger, T. C. and Waldo,G. S. Engineering and characterization of a superfolder green fluorescent protein. Nature Biotechnology 24: 79-101 (2006).
Livet, J., Weissman, T. A., Kang, H., Draft, R. W., Lu, J., Bennis, R. A., Sanes, J. R. and Lichtman, J. W. Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system. Nature 450: 56-71 (2007).
Sakaue-Sawano, A., Kurokawa, H., Morimura, T., Hanyu, A., Hama, H., Osawa, H., Kashiwagi, S., Fukami, K., Miyata, T., Miyoshi, H., Imamura, T., Ogawa, M., Masai, H. and Miyawaki, A. Visualizing spatiotemporal dynamics of multicellular cell-cycle progression. Cell 132: 487-498 (2008).
Nguyen, A. W. and Daugherty, P. S. Evolutionary optimization of fluorescent proteins for intracellular FRET. Nature Biotechnology 23: 355-366 (2005).
Kogure, T., Karasawa, S., Araki, T., Saito, K., Kinjo, M. and Miyawaki, A. A fluorescent variant of a protein from the stony coral Montipora facilitates dual-color single-laser fluorescence cross-correlation spectroscopy. Nature Biotechnology 24: 577-589 (2006).
Blab, G. A., Lommerse, P. H. M., Cognet, L., Harms, G. S., Schmidt, T. Two-photon excitation action cross-sections of the autofluorescent proteins. Chemical Physics Letters 350: 71-77 (2001).

Additional Literature Sources

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Aeby, G. S. Corals in the genus porites are susceptible to infection by a larval trematode.Coral Reefs 22: 216 (2003).
Agbulut, O., Huet, A., Niederlander, N., Puceat, M., Menasche, P. and Coirault, C. Green fluorescent protein impairs actin-myosin interactions by binding to the actin-binding site of myosin. Journal of Biological Chemistry 282: 10465-10471 (2007).
Agmon, N. Proton Pathways in green fluorescence protein. Biophysical Journal 88: 2452-2461 (2005).
Agmon, N. Kinetics of switchable proton escape from a proton-wire within green fluorescence protein. Journal of Physical Chemistry 111: 7870- 7878 (2007).
Ai, H. W., Henderson, J. N., Remington, S. J. and Campbell, R. E. Directed evolution of a monomeric, bright and photostable version of Clavularia cyan fluorescent protein: structural characterization and applications in fluorescence imaging. Biochemical Journal400: 531-540 (2006).
Ai, H. W., Olenych, S. G., Wong, P., Davidson, M. W. and Campbell, R. E. Hue-shifted monomeric variants of Clavularia cyan fluorescent protein: identification of the molecular determinants of color and applications in fluorescence imaging. BMC Biology 6: 13-25 (2008).
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