Specialized Superresolution Methods Literature References
In additional to the single-molecule and point-spread function engineering approaches to superresolution microscopy, a host of emerging methodology is now being examined for potential applications in this arena. The review articles and research reports listed in this section describe a variety of new techniques related to superresolution imaging.
Recommended Literature
- Betzig, E. Sparse and composite coherent lattices. Physical Review A 71: 063406-5 (2005).
- de Jonge, N., Peckys, D. B., Kremers, G. J. and Piston, D. W. Electron microscopy of whole cells in liquid with nanometer resolution. Proceedings of the National Academy of Sciences (USA) 106: 2159-2164 (2009).
- Digman, M. A., Wiseman, P. W., Horwitz, A. R. and Gratton, E. Detecting protein complexes in living cells from laser scanning confocal image sequences by the cross correlation raster image spectroscopy method. Biophysical Journal 96: 707-716 (2009).
- Dogan, M., Yalcin, A., Jain, S., Goldberg, M. B., Swan, A. K., Unlu, M. S. and Goldberg, B. B.Spectral self-interference fluorescence microscopy for subcellular imaging. IEEE Journal of Selected Topics in Quantum Electronics 14: 217-225 (2008).
- Downing, K. H., Sui, H. and Auer, M. Electron tomography: A 3D view of the subcellular world. Analytical Chemistry 79: 7949-7957 (2007).
- Franz, C. M. and Puech, P. H. Atomic force microscopy: A versatile tool for studying cell morphology, adhesion and mechanics. Cellular and Molecular Bioengineering 1: 289-300 (2008).
- Generosi, J., Margaritondo, G., Kropf, M., Hirling, H., Catsicas, S., Johnsson, K., Tolk, N. H., Piston, D. W. and Cricenti, A. Photobleaching-free infrared near-field microscopy localizes molecules in neurons. Journal of Applied Physics 104: 106102-3 (2008).
- Genet, C. and Ebbesen, T. W. Light in tiny holes. Nature 445: 39-46 (2007).
- Giepmans, B. N. G. Bridging fluorescence microscopy and electron microscopy.Histochemistry and Cell Biology 130: 211-217 (2008).
- Haeberle, O. and Simon, B. Saturated structured confocal microscopy with theoretically unlimited resolution. Optics Communications 282: 3657-3664 (2009).
- Heymann, J. A. W., Shi, D., Kim, S., Bliss, D., Milne, J. L. S., Subramaniam, S. 3D imaging of mammalian cells with ion-abrasion scanning electron microscopy. Journal of Structural Biology 166: 1-7 (2009).
- Hu, D. Tian, Z., Wu, W., Wan, W. and Li, A. D. Q. Photoswitchable nanoparticles enable high-resolution cell imaging: PULSAR microscopy. Journal of the American Chemical Society130: 15279-15281 (2008).
- Ji, N., Milkie, D. E. and Betzig, E. Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues. Nature Methods 7: 141-147 (2009).
- Kam, Z., Kner, P., Agard, D. and Sedat, J. W. Modelling the application of adaptive optics to wide-field microscope live imaging. Journal of Microscopy 226: 33-42 (2007).
- Le Gros, M. A., McDermott, G., Uchida, M., Knoechel, C. G. and Larabell, C. A. High-aperture cryogenic light microscopy. Journal of Microscopy 235: 1-8 (2009).
- Lindek, S. and Stelzer, E. H. K. Resolution improvement by nonconfocal theta microscopy.Optics Letters 24: 1505-1507 (1999).
- Lu, J., Min, W., Conchello, J. A., Xie, X. S. and Lichtman, J. W. Super-resolution laser scanning microscopy through spatiotemporal modulation. Nano Letters 9: 3883-3889 (2009).
- Lucic, V., Leis, A. and Baumeister, W. Cryo-electron tomography of cells: Connecting structure and function. Histochemistry and Cell Biology 130: 185-196 (2008).
- Mao, S., Benninger, R. K. P., Yan, Y., Petchprayoon, C., Jackson, D., Easley, C. J., Piston, D. W. and Marriott, G. Optical lock-in detection of FRET using synthetic and genetically encoded optical switches. Biophysical Journal 94: 4515-4524 (2008).
- Meislitzer-Ruppitsch, C., Rohrl, C., Neumuller, J., Pavelka, M. and Ellinger, A. Photooxidation technology for correlated light and electron microscopy. Journal of Microscopy 235: 322-335 (2009).
- Oreopoulos, J. and Yip, C. M Combined scanning probe and total internal reflection fluorescence microscopy. Methods 46: 2-10 (2008).
- Petrasek, Z. and Schwille, P. Fluctuations as a source of information in fluorescence microscopy. Journal of the Royal Society Interface 6: S15-S25 (2009).
- Planken, P. Microscopy: A terahertz nanoscope. Nature 456: 454-455 (2008).
- Pohl, D. W., Denk, W. and Lanz, M. Optical stethoscopy: Image recording with resolution wavelength/20. Applied Physics Letters 44: 651-653 (1984).
- Schwartz, C. L., Sarbash, V. I., Ataullakhanov, F. I., McIntosh, J. R. and Nicastro, D. Cryo-fluorescence microscopy facilitates correlations between light and cryo-electron microscopy and reduces the rate of photobleaching. Journal of Microscopy 227: 98-109 (2007).
- Sheetz, K. E. and Squier, J. Ultrafast optics: Imaging and manipulating biological systems.Journal of Applied Physics 105: 051101-17 (2009).
- Smolyaninov, I. I., Hung, Y. J. and Davis, C. C. Magnifying superlens in the visible frequency range. Science 315: 1699-1701 (2007).
- Smolyaninov, I. I. Optical microscopy beyond the diffraction limit. HFSP Journal 2: 129-131 (2008).
- Steven, A. C. and Baumeister, W. The future is hybrid. Journal of Structural Biology 163:186-195 (2008).
- Zipfel, W. R., Williams, R. M. and Webb, W. W. Nonlinear magic: Multiphoton microscopy in the biosciences. Nature Biotechnology 21: 1369-1377 (2003).
Additional Literature Sources
- Betzig, E. Excitation strategies for optical lattice microscopy. Optics Express 13: 3021-3036 (2005).
- Betzig, E. and Chichester, R. J. Single molecules observed by near-field scanning optical microscopy. Science 262: 1422-1425 (1993).
- Degen, C. Nanoscale magnetometry: Microscopy with single spins. Nature Nanotechnology 3: 643-644 (2008).
- Digman, M. A. and Gratton, E. Analysis of diffusion and binding in cells using the RICS approach. Microscopy Research and Technique 72: 323-332 (2009).
- Egner, A. and Hell, S. W. Equivalence of the Huygens-Fresnel and Debye approach for the calculation of high aperture point-spread functions in the presence of refractive index mismatch. Journal of Microscopy 193: 244-249 (1999).
- Egner, A. and Hell, S. W. Time multiplexing and parallelization in multifocal multiphoton microscopy. Journal of the Optical Society of America A 17: 1192-1201 (2000).
- Elgass, K., Caesar, K., Schleifenbaum, F., Stierhof, Y. D., Meixner, A. J. and Harter, K. Novel application of fluorescence lifetime and fluorescence microscopy enables quantitative access to subcellular dynamics in plant cells. PLoS ONE 4: e5716-13 (2009).
- Engel, E., Huse, N., Klar, T. A. and Hell, S. W. Creating wavelength/3 focal holes with a Mach-Zehnder interferometer. Applied Physics B: Lasers and Optics 77: 11-17 (2003).
- Festy, F., Ameer-Beg, S. M., Ng, T. and Suhling, K. Imaging proteins in vivo using fluorescence lifetime microscopy. Molecular BioSystems 3: 381-391 (2007).
- Frank, J. H., Elder, A. D., Swartling, J., Venkitaraman, A. R., Jeyasekharan, A. D. and Kaminski, C. F. A white light confocal microscope for spectrally resolved multidimensional imaging.Journal of Microscopy 227: 203-215 (2007).
- Giansante, C., Olive, A. G. L., Schafer, C., Raffy, G. and Del Guerzo, A. Time-resolved confocal fluorescence microscopy of trinitrobenzene-responsive organic nanofibers.Analytical and Bioanalytical Chemistry 396: 125-131 (2009).
- Kastrup, L., Blom, H., Eggeling, C. and Hell, S. W. Fluorescence fluctuation spectroscopy in subdiffraction focal volumes. Physical Review Letters 94: 178104-4 (2005).
- Kee, H. L., Diers, J. R., Ptaszek, M., Muthiah, C., Fan, D., Lindsey, J. S., Bocian, D. F. and Holten, D. Chlorin-bacteriochlorin energy-transfer dyads as prototypes for near-infrared molecular imaging probes: Controlling charge-transfer and fluorescence properties in polar media. Photochemistry and Photobiology 85: 909-920 (2009).
- Kunik, D., Luduena, S. J., Costantino, S. and Martinez, O. E. Fluorescent two-photon nanolithography. Journal of Microscopy 229: 540-544 (2008).
- Langhojer, F., Dimler, F., Jung, G. and Brixner, T. Ultrafast photoconversion of the green fluorescent protein studied by accumulative femtosecond spectroscopy. Biophysical Journal 96: 2763-2770 (2009).
- Liu, Z., Durant, S., Lee, H., Pikus, Y., Xiong, Y., Sun, C. and Zhang, X. Experimental studies of far-field superlens for sub-diffractional optical imaging. Optics Express 15: 6947-6954 (2007).
- Liu, Z., Lee, H., Xiong, Y., Sun, C. and Zhang, X. Far-field optical hyperlens magnifying sub-diffraction-limited objects. Science 315: 1686 (2007).
- Lowry, M., Fakayode, S. O., Geng, M. L., Baker, G. A., Wang, L., McCarroll, M. E., Patonay, G. and Warner, I. M. Molecular fluorescence, phosphorescence, and chemiluminescence spectrometry. Analytical Chemistry 80: 4551-4574 (2008).
- Mishchenko, Y. On optical detection of densely labeled synapses in neuropil and mapping connectivity with combinatorially multiplexed fluorescent synaptic markers. PLoS ONE 5:e8853-10 (2010).
- Mondal, P. P. and Diaspro, A. Lateral resolution improvement in two-photon excitation microscopy by aperture engineering. Optics Communications 281: 1855-1859 (2008).
- Nakayama, Y., Pauzauskie, P. J., Radenovic, A., Onorato, R. M., Saykally, R. J., Liphardt, J. and Yang, P. Tunable nanowire nonlinear optical probe. Nature Letters 447: 1098-1101 (2007).
- Nikolaenko, A., Krishnamachari, V. V. and Potma, E. O. Interferometric switching of coherent anti-Stokes Raman scattering signals in microscopy. Physical Review 79: 013823-7 (2009).
- Odenheimer, J., Heermann, D. W. and Kreth, G. Brownian dynamics simulations reveal regulatory properties of higher-order chromatin structures. European Biophysics Journal38: 749-756 (2009).
- Palomba, S. and Novotny, L. Near-field imaging with a localized nonlinear light source.Nano Letters 9: 3801-3804 (2009).
- Parkinson, D. Y., McDermott, G., Etkin, L. D., Le Gross, M. A. and Larabell, C. A. Quantitative 3-D imaging of eukaryotic cells using soft X-ray tomography. Journal of Structural Biology162: 380-386 (2008).
- Prinz, A., Reither, G., Diskar, M. and Schultz, C. Fluorescence and bioluminescence procedures for functional proteomics. Proteomics 8: 1179-1196 (2008).
- Ram, S., Prabhat, P., Chao, J., Ward, E. S. and Ober, R. J. Improved single particle localization accuracy with dual objective multifocal plane microscopy. Optics Express 17:6881-6898 (2009).
- Rauch, J., Knoch, T. A., Solovei, I., Teller, K., Stein, S., Buiting, K., Horsthemke, B., Langowski, J., Cremer, T., Hausmann, M. and Cremer, C. Light optical precision measurements of the active and inactive Prader-Willi syndrome imprinted regions in human cell nuclei.Differentiation 76: 66-82 (2008).
- Richards, C. I., Hsiang, J. and Dickson, R. M. Synchronously amplified fluorescence image recovery (SAFIRe). Journal of Physical Chemistry B 114: 660-665 (2010).
- Rochira, J. A., Gudheti, M. V., Gould, T. J., Laughlin, R. R., Nadeau, J. L. and Hess, S. T.Fluorescence intermittency limits brightness in CdSe/ZnS nanoparticles quantified by fluorescence correlation spectroscopy. Journal of Physical Chemistry C 111: 1695-1708 (2007).
- Rong, G., Wang, H., Skewis, L. R. and Reinhard, B. M. Resolving Sub-diffraction limit encounters in nanoparticle tracking using live cell Plasmon coupling microscopy. Nano Letters 8: 3386-3393 (2008).
- Rong, G., Wang, H., Skewis, L. R. and Reinhard, B. M. Insights from a nanoparticle minuet: Two-dimensional membrane profiling through silver plasmon ruler tracking. Nano Letters10: 230-238 (2010).
- Schleifenbaum, F., Elgass, K., Sackrow, M., Caesar, K., Berendzen, K., Meixner, J. A. and Harter, K. Fluorescence intensity decay shape analysis microscopy (FIDSAM) for quantitative and sensitive live-cell imaging: A novel technique for fluorescence microscopy of endogenously expressed fusion-proteins. Molecular Plant 3: 555-562 (2010).
- Schonle, A., Glatz, M. and Hell, S. W. Four-dimensional multiphoton microscopy with time-correlated single-photon counting. Applied Optics 39: 6306-6311 (2000).
- Schultz, Z. D., Stranick, S. J. and Levin, I. W. Advantages and artifacts of higher order modes in nanoparticle-enhanced backscattering Raman imaging. Analytical Chemistry 81: 9657-9663 (2009).
- Seale, K. T., Reiserer, R. S., Markov, D. A., Ges, I. A., Wright, C., Janetopoulos, C. and Wikswo, J. P. Mirrored pyramidal wells for simultaneous multiple vantage point microscopy.Journal of Microscopy 232: 1-6 (2008).
- Stark, P. R. H., Halleck, A. E. and Larson, D. N. Breaking the diffraction barrier outside of the optical near-field with bright, collimated light from nanometric apertures. Proceedings of the National Academy of Sciences (USA) 104: 18902-18906 (2007).
- Steven, A. C. and Baumeister, W. The future is hybrid. Journal of Structural Biology 163:186-195 (2008).
- Sun, P., Laforge, F. O., Abeyweera, T. P., Rotenberg, S. A., Carpino, J. and Mirkin, M. V.Nanoelectrochemistry of mammalian cells. Proceedings of the National Academy of Sciences (USA) 105: 443-448 (2008).
- Taatjes, D. J., Wadsworth, M. P., Quinn, A. S., Rand, J. H., Bovill, E. G. and Sobel, B. E. Imaging aspects of cardiovascular disease at the cell and molecular level. Histochemistry and Cell Biology 130: 235-245 (2008).
- Testa, I., Schole, A., von Middendorff, C., Geisler, C., Medda, R., Wurm, C. A., Stiel, A. C., Jakobs, S., Bossi, M., Eggeling, R., Hell, S. W. and Egner, A. Nanoscale separation of molecular species based on their rotational mobility. Optics Express 16: 21093-21104 (2008).
- Vermot, J., Fraser, S. E. and Liebling, M. Fast fluorescence microscopy for imaging the dynamics of embryonic development. Human Frontier Science Program Journal 2: 143-155 (2008).
- Vonesch, C. and Unser, M. A fast thresholded landweber algorithm for wavelet-regularized multidimensional deconvolution. IEEE Transactions on Image Processing 17: 539-549 (2008).
- Wang, H. and Zou, S. Gain and loss of propagating electromagnetic wave along a hollow silver nanorod. Physical Chemistry Chemical Physics 11: 5871-5875 (2009).
- Watt, F., Bettiol, A. A., van Kan, J. A., Ynsa, M. D., Minquin, R., Rajendran, R., Huifang, C., Fwu-Shen, S. and Jenner, A. M. Imaging of single cells and tissue using MeV ions. Nuclear Instruments and Methods in Physics Research B: Beam Interactions with Materials and Atoms 267: 2113-2116 (2009).
- Wu, D., Liu, Z., Sun, C. and Zhang, X. Super-Resolution Imaging by Random Adsorbed Molecule Probes. Nano Letters 8: 1159-1162 (2008).
- Yang, A. H. J., Moore, S. D., Schmidt, B. S., Klug, M., Lipson, M. and Erickson, D. Optical manipulation of nanoparticles and biomolecules in sub-wavelength slot waveguides.Nature 457: 71-75 (2009).
- Yao, X. and Fang, G. Visualization and orchestration of the dynamic molecular society in cells. Cell Research 19: 152-156 (2009).